How about setting those particular rules to log and pass then, might be possible to at least keep an eye on it that way. Remarking them out would get you going till the devs work out a fix for the cart of course. If its a paid cart and not publicly accessible you might be ok, short term although I'm not sure I'd want to chance it myself, depending on the situation. (backups might be a good thing to have if you disabled them and get hit.)
BTW, I did find a post on a forum for avactis stating they too are having this problem and would fix for next release. Of course that was posted in March.
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