Here would be my suggestion.
1. Have both drives in the system when you begin your installation.
2. Let your linux version find both drives.
(one last suggestion - suggest you use CentOS vs. Fedora for a production box)
(you can download the ISO online by clicking here )
(Cent OS is a Red Hat rebuild and very stable. Fedora is good but not suggested by many for Production Servers...)
3. When setting up your server I would suggest making a change to the install so your system using the following drive configuration (choose make my own vs. Disk Druid)
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ifferent partition schemes are suitable for different types of hosting. Some servers may require space to be allocated in different ways than others. This recommended scheme is an attempt to provide enough space for many different types of hosting but it is no substitution for real world experience. This partition scheme may need to be varied to suit the needs of your specific setup.
swap 2x memory size
/boot 750 Megabyteds (Mb)
/tmp 750+ Mb
/ grow to fill disk size
*When you install cPanel this way your home directories as well as /var and others will autocreate themselves. The limitation in following the [URL="http://www.cpanel.net/docs/whm/Installation.htm"]installation directions as listed on the cPanel website[/URL] does not allow for your /var directory to autogrow when needed. Some directories may need to grow larger than the default (ie: /var stores your MySQL databases by default... imagine if you lost space due to a size limit - mySQL would fail...)
For the second drive set as /Backup and autogrow to complete size.
4. Once done
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Make sure you are logged in as root.
# cd /home
# wget http://layer1.cpanel.net/latest
# sh latest
5. Once Completed type after the #> prompt: /scripts/securetmp and choose y to both questions.
You should be installed. Hope this helps.