Is there a way to preserve amends we make to first (default) VirtualHost container in /etc/httpd/conf/httpd.conf?
We have a custom setup for a site and we want all unmatched hostnames to be caught by that VirtualHost. As per Apache manual all unmatched hosts are processed by first VirtualHost directive, hence we copied DocumentRoot, suPHP user and some other values from out main site's VH.
Running /usr/local/cpanel/bin/apache_conf_distiller --update and then /usr/local/cpanel/bin/build_apache_conf reverts our changes.


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