Adding new sites does not add entry to named.conf

When adding sites to my server the site gets added and the domain.coim.db zone file is created but it does not add and entry to /etc/named.conf and I need to manually add it.

I also noticed when editing the DNS zone of the domain in question if I save the zone bind gives a connection refused error but if I restart via WHM or SSH it works fine even if the entry has not been added to the named.conf yet.