Ya know what I'd rather see is a way to be more flexible with this stuff.
Instead of having scripts suddenly appear that you may not want to have and some that have been around for ages that should maybe be taken out . I'd rather see a method added to easily install or de-install to Cpanel. Maybe a WHM option to enable PhpBB, OpenBB, etc. A modules system adopted.
Being there are so many scripts with so many methods of installation, I know this is probably not an easy possibility.
I think it might be best to quit adding scripts until a better method is adopted. Maybe a good Forum and WebMail should be found but beyond that lets just keep it simple.