I have tried everything related to this issue that i found on the cpanel forums. I have increased the cpanel process memory to 1024. I have removed ioncube and other extensions to see if that is the problem and still there is no option for a php handler. Magic Quotes is off (it was never on). I have rebuilt Apache many times still with the same issue.
I also have both AN_EASYAPACHE_BUILD_IS_CURRENTLY_RUNNING and IF_YOU_ARE_LOOKING_FOR_MISSING_DIRECTORIES_READTHIS in the /usr/loca/apache directory.
Report Id': '9723253'
Rebuild Current Results
root [~]# /usr/local/cpanel/bin/rebuild_phpconf --current
Available handlers: suphp dso fcgi cgi none
DEFAULT PHP: 5
PHP4 SAPI: none
PHP5 SAPI: none
SUEXEC: enabled
RUID2: not installed
Rebuild phpconf Results
/usr/local/cpanel/bin/rebuild_phpconf 5 none suphp 1
Invalid combination.
PHP5 is not available. Please rebuild apache if you require this configuration.
/usr/local/cpanel/bin/rebuild_phpconf 5 none cgi 1
Invalid combination.
PHP5 is not available. Please rebuild apache if you require this configuration.
PHP.CONF - This has nothign in it
/usr/local/apache/conf/php.conf
This file was automatically generated by the Cpanel PHP Configuration system
# If you wish to change the way PHP is being handled by Apache on your system,
# use the /usr/local/cpanel/bin/rebuild_phpconf script or the WHM interface.
#
# Manual edits of this file will be lost when Apache is updated.
# End of autogenerated PHP configuration.

I also have both AN_EASYAPACHE_BUILD_IS_CURRENTLY_RUNNING and IF_YOU_ARE_LOOKING_FOR_MISSING_DIRECTORIES_READTHIS in the /usr/loca/apache directory.
Report Id': '9723253'
Rebuild Current Results
root [~]# /usr/local/cpanel/bin/rebuild_phpconf --current
Available handlers: suphp dso fcgi cgi none
DEFAULT PHP: 5
PHP4 SAPI: none
PHP5 SAPI: none
SUEXEC: enabled
RUID2: not installed
Rebuild phpconf Results
/usr/local/cpanel/bin/rebuild_phpconf 5 none suphp 1
Invalid combination.
PHP5 is not available. Please rebuild apache if you require this configuration.
/usr/local/cpanel/bin/rebuild_phpconf 5 none cgi 1
Invalid combination.
PHP5 is not available. Please rebuild apache if you require this configuration.
PHP.CONF - This has nothign in it
/usr/local/apache/conf/php.conf
This file was automatically generated by the Cpanel PHP Configuration system
# If you wish to change the way PHP is being handled by Apache on your system,
# use the /usr/local/cpanel/bin/rebuild_phpconf script or the WHM interface.
#
# Manual edits of this file will be lost when Apache is updated.
# End of autogenerated PHP configuration.
