Apache conf Distiller - Where are changes stored?

Did you make a backup of httpd.conf prior to making these changes? If not, you really need to always make a backup of httpd.conf prior to making any edits. Backups for all files prior to editing is pretty important.

As for the location, normally the ScriptAlias lines are in /var/cpanel/templates/apache2 location in the main.default file. If you commented them out, they might not be read from that file and might instead be pulled from /var/cpanel/conf/apache/main file. I would suggest copying all files to /root before you do anything more to ensure you have copies:

Code:

cp /usr/local/apache/conf/httpd.conf /root/httpd.conf.bak111207
cp /var/cpanel/templates/apache2/main.default /root/main.default.bak111207
cp /var/cpanel/conf/apache/main /root/main.bak111207

If there is a /var/cpanel/conf/apache/local file, copy that file as well:

Code:

cp /var/cpanel/conf/apache/local /root/local.bak111207

After that, you might try moving the /var/cpanel/conf/apache/main file entirely elsewhere such as /var/cpanel/conf/apache/main.bak, then re-running the distill and rebuild command to see the results:

Code:

/usr/local/cpanel/bin/apache_conf_distiller --update
/scripts/rebuildhttpdconf