There is option in WHM to transfer accounts from a Plesk panel to the server, but it wont work fine always. You may have to upload files manually for most of the time.
What OS is your server running? I have a server that was originally built using plesk on fc4 (and its fu*ked up partition schema), I managed to clean plesk off and with the help of chirpy from configserver re-configuring the partitions for me, cPanel installed and is running perfectly well
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