Index Manager Reading Directory Wrong

This is affecting all accounts on the server.

When ine goes into the manager it shows a folder that lays below in Web directory root.

When you click on "up one leval" You recive this error:

Unable to change directory to /home/phpgot/home! You do not seem to have access permissions! (System Error: No such file or directory)

In is impossiable to gain a view of all folders laying in Web Root (public_html). It looks like it is adding a "home" directory instead of a "public_html" Directory.

Running:
WHM 11.0.0 cPanel 11.1-E342
Fedora i686 - WHM X v3.1.0

any ideas on were i can fix this call-out?