MariaDB service down

R

rs200

Active Member
Dec 4, 2017
34
8
8
Italy
cPanel Access Level
Root Administrator
Hi,

i have an issue on a VPS with cPanel installed.

Today i noticed that one of my app can't write session data on disk, so after some troubleshooting, i saw disk space full on 100%.

I made the error to activate backup on WHM with too many retentions, so disk become full last night.

I rebooted the VPS from WHM but some service were down (cpanelsolr, mariadb and another).

To speed up, i deleted directly from SSH the older backups in order to free some space.

After that, i rebooted again and now only mariadb is down. I can't start it neither from SSH.

I got this errors

Code: 
# systemctl start mariadb

Job for mariadb.service failed because the control process exited with error code. See "systemctl status mariadb.service" and "journalctl -xe" for details.
Code: 
# systemctl -l status mariadb

mariadb.service - MariaDB 10.1.41 database server
   Loaded: loaded (/usr/lib/systemd/system/mariadb.service; enabled; vendor preset: disabled)
  Drop-In: /etc/systemd/system/mariadb.service.d
           └─migrated-from-my.cnf-settings.conf, protecthome.conf
   Active: failed (Result: exit-code) since Fri 2019-10-11 12:53:32 CEST; 1min 37s ago
     Docs: man:mysqld(8)
           https://mariadb.com/kb/en/library/systemd/
  Process: 7786 ExecStart=/usr/sbin/mysqld $MYSQLD_OPTS $_WSREP_NEW_CLUSTER $_WSREP_START_POSITION (code=exited, status=1/FAILURE)
  Process: 7756 ExecStartPre=/bin/sh -c [ ! -e /usr/bin/galera_recovery ] && VAR= ||   VAR=`/usr/bin/galera_recovery`; [ $? -eq 0 ]   && systemctl set-environment _WSREP_START_POSITION=$VAR || exit 1 (code=exited, status=0/SUCCESS)
  Process: 7754 ExecStartPre=/bin/sh -c systemctl unset-environment _WSREP_START_POSITION (code=exited, status=0/SUCCESS)
 Main PID: 7786 (code=exited, status=1/FAILURE)
   Status: "MariaDB server is down"

Oct 11 12:53:29 server.gnnserver.com systemd[1]: Starting MariaDB 10.1.41 database server...
Oct 11 12:53:29 server.gnnserver.com mysqld[7786]: 2019-10-11 12:53:29 139964404709632 [Note] /usr/sbin/mysqld (mysqld 10.1.41-MariaDB) starting as process 7786 ...
Oct 11 12:53:32 server.gnnserver.com systemd[1]: mariadb.service: main process exited, code=exited, status=1/FAILURE
Oct 11 12:53:32 server.gnnserver.com systemd[1]: Failed to start MariaDB 10.1.41 database server.
Oct 11 12:53:32 server.gnnserver.com systemd[1]: Unit mariadb.service entered failed state.
Oct 11 12:53:32 server.gnnserver.com systemd[1]: mariadb.service failed.
What have i do to fix the issue?
 
R

rs200

Active Member
Dec 4, 2017
34
8
8
Italy
cPanel Access Level
Root Administrator
GOT said:
You probably need to look in the hostname.err log in /var/lib/mysql to really see why its failing, what you have included here does not actually tell us.
Click to expand...
Hi GOT,

these are the last 200 lines of the error log

Code: 
2019-10-11 13:46:19 140535658191104 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 13:46:19 140535658191104 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 13:46:19 140535658191104 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 13:46:19 140535658191104 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 13:46:19 140535658191104 [Note] InnoDB: Waiting for purge to start
2019-10-11 13:46:19 140535658191104 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457190
2019-10-11 13:46:19 140534869915392 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 13:46:19 140535658191104 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 13:46:19 140535658191104 [Note] Recovering after a crash using tc.log
2019-10-11 13:46:19 140535658191104 [ERROR] Can't init tc log
2019-10-11 13:46:19 140535658191104 [ERROR] Aborting

2019-10-11 13:51:34 140710433106176 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Using Linux native AIO
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 13:51:34 140710433106176 [Note] InnoDB: Waiting for purge to start
2019-10-11 13:51:34 140710433106176 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457200
2019-10-11 13:51:34 140710433106176 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 13:51:34 140710433106176 [Note] Recovering after a crash using tc.log
2019-10-11 13:51:34 140710433106176 [ERROR] Can't init tc log
2019-10-11 13:51:34 140710433106176 [ERROR] Aborting

2019-10-11 13:56:36 139808954480896 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Using Linux native AIO
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 13:56:36 139808954480896 [Note] InnoDB: Waiting for purge to start
2019-10-11 13:56:36 139808954480896 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457210
2019-10-11 13:56:36 139808164804352 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 13:56:36 139808954480896 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 13:56:36 139808954480896 [Note] Recovering after a crash using tc.log
2019-10-11 13:56:36 139808954480896 [ERROR] Can't init tc log
2019-10-11 13:56:36 139808954480896 [ERROR] Aborting

2019-10-11 14:01:41 140146544408832 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Using Linux native AIO
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 14:01:41 140146544408832 [Note] InnoDB: Waiting for purge to start
2019-10-11 14:01:41 140146544408832 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457220
2019-10-11 14:01:41 140145755944704 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 14:01:41 140146544408832 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 14:01:41 140146544408832 [Note] Recovering after a crash using tc.log
2019-10-11 14:01:41 140146544408832 [ERROR] Can't init tc log
2019-10-11 14:01:41 140146544408832 [ERROR] Aborting

2019-10-11 14:07:51 140002881116416 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Using Linux native AIO
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 14:07:51 140002881116416 [Note] InnoDB: Waiting for purge to start
2019-10-11 14:07:51 140002881116416 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457230
2019-10-11 14:07:51 140002092640000 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 14:07:51 140002881116416 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 14:07:51 140002881116416 [Note] Recovering after a crash using tc.log
2019-10-11 14:07:51 140002881116416 [ERROR] Can't init tc log
2019-10-11 14:07:51 140002881116416 [ERROR] Aborting

2019-10-11 14:14:00 140437970098432 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Using Linux native AIO
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 14:14:00 140437970098432 [Note] InnoDB: Waiting for purge to start
2019-10-11 14:14:00 140437970098432 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457240
2019-10-11 14:14:01 140437176186624 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 14:14:01 140437970098432 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 14:14:01 140437970098432 [Note] Recovering after a crash using tc.log
2019-10-11 14:14:01 140437970098432 [ERROR] Can't init tc log
2019-10-11 14:14:01 140437970098432 [ERROR] Aborting

2019-10-11 14:17:20 140679455901952 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Using Linux native AIO
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 14:17:20 140679455901952 [Note] InnoDB: Waiting for purge to start
2019-10-11 14:17:20 140679455901952 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457250
2019-10-11 14:17:20 140678667433728 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 14:17:20 140679455901952 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 14:17:20 140679455901952 [Note] Recovering after a crash using tc.log
2019-10-11 14:17:20 140679455901952 [ERROR] Can't init tc log
2019-10-11 14:17:20 140679455901952 [ERROR] Aborting

2019-10-11 14:19:21 140531384215808 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Using Linux native AIO
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 14:19:21 140531384215808 [Note] InnoDB: Waiting for purge to start
2019-10-11 14:19:21 140531384215808 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457260
2019-10-11 14:19:21 140530604304128 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 14:19:21 140531384215808 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 14:19:21 140531384215808 [Note] Recovering after a crash using tc.log
2019-10-11 14:19:21 140531384215808 [ERROR] Can't init tc log
2019-10-11 14:19:21 140531384215808 [ERROR] Aborting

2019-10-11 14:24:23 140606924716288 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Using Linux native AIO
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 14:24:23 140606924716288 [Note] InnoDB: Waiting for purge to start
2019-10-11 14:24:23 140606924716288 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457270
2019-10-11 14:24:23 140606139528960 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 14:24:23 140606924716288 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 14:24:23 140606924716288 [Note] Recovering after a crash using tc.log
2019-10-11 14:24:23 140606924716288 [ERROR] Can't init tc log
2019-10-11 14:24:23 140606924716288 [ERROR] Aborting

2019-10-11 14:29:27 140643549071616 [Note] InnoDB: innodb_empty_free_list_algorithm has been changed to legacy because of small buffer pool size. In order to use backoff, increase buffer pool at least up to 20MB.

2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Using mutexes to ref count buffer pool pages
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: The InnoDB memory heap is disabled
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Compressed tables use zlib 1.2.7
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Using Linux native AIO
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Using SSE crc32 instructions
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Completed initialization of buffer pool
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Highest supported file format is Barracuda.
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: 128 rollback segment(s) are active.
2019-10-11 14:29:27 140643549071616 [Note] InnoDB: Waiting for purge to start
2019-10-11 14:29:27 140643549071616 [Note] InnoDB:  Percona XtraDB (http://www.percona.com) 5.6.44-86.0 started; log sequence number 446457280
2019-10-11 14:29:27 140642755802880 [Note] InnoDB: Dumping buffer pool(s) not yet started
2019-10-11 14:29:27 140643549071616 [Note] Plugin 'FEEDBACK' is disabled.
2019-10-11 14:29:27 140643549071616 [Note] Recovering after a crash using tc.log
2019-10-11 14:29:27 140643549071616 [ERROR] Can't init tc log
2019-10-11 14:29:27 140643549071616 [ERROR] Aborting
 
GOT

GOT

Get Proactive!
PartnerNOC
Apr 8, 2003
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This looks like your failure

2019-10-11 13:56:36 139808954480896 [Note] Recovering after a crash using tc.log
2019-10-11 13:56:36 139808954480896 [ERROR] Can't init tc log
2019-10-11 13:56:36 139808954480896 [ERROR] Aborting

Basically innodb needs to go into recovery because the disk got full and you likely have corrupted data.

First make sure that your partition that holds /var is not full. If it is not full see if this file exists and mv it to a backup:

mv /var/lib/mysql/tc.log /var/lib/mysql/tc_bkp.log

then try starting mariadb again. But you gotta have a reasonable amount of free space on /var and /tmp
 
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