So far as cPanel is concerned you should have no problems. It does depend on how you're going to migrate the data. If you're going to use full cPanel backups you should have no problems at all. If you're looking to use this method:
http://forums.cpanel.net/showthread.php?t=35046
You may need to remove:
/var/cpanel/useup2date
and add:
/var/cpanel/useyum
http://forums.cpanel.net/showthread.php?t=35046
You may need to remove:
/var/cpanel/useup2date
and add:
/var/cpanel/useyum
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