I'm trying to change the path of the default cgi-bin to outside the public_html directory. In the old days, I would just edit the httpd.conf and edit the line with the scriptalias within each VirtualHost that I want to modify, but with WHM, it now automatically changes the httpd.conf file so any changes i make are erased on the next build. How do I make this work?
You will need to create a custom virtualhost template as described here: cPanel - The Easy Apache Configuration System - Adding Custom Directives to httpd.conf