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mysql CPU usage too high

Discussion in 'Workarounds and Optimization' started by kemcoi, Apr 26, 2014.

  1. kemcoi

    kemcoi Registered

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    Recently my server CPU has been going very high.

    My server information: Intel® Pentium® E5400 2.70GHz 2M Cache HDD: 250GB RAM: 4GB

    Currently, My my.cnf file such as below:
    PHP:
    [mysqld]
    default-    storage-engine=innodb
    local    -infile=0
    skip    -locking
    max_connections    =300
    key_buffer     = 128M
    myisam_sort_buffer_size     = 64M
    join_buffer_size     = 1M
    read_buffer_size     = 2M
    sort_buffer_size     = 2M
    read_rnd_buffer_size     = 2M
    table_cache     = 1024
    record_buffer     = 1M
    thread_cache_size     = 128
    wait_timeout     = 30
    connect_timeout     = 10
    interactive_timeout     = 10
    tmp_table_size     = 64M
    max_heap_table_size     = 64M
    max_allowed_packet     = 16M
    max_connect_errors     = 10
    query_cache_limit     = 1M
    query_cache_size     = 64M
    query_cache_type     = 1
    [isamchk]
    key_buffer=64M
    sort_buffer    =64M
    read_buffer    =16M
    write_buffer    =16M
    [myisamchk]
    key_buffer=64M
    sort_buffer    =64M
    read_buffer    =16M
    write_buffer    =16M
    [mysqlhotcopy]
    interactive-timeout
    CPU Usage: u623.84 s78.87 cu0 cs0 - 8.12% CPU load MYSQLD: 190% CPU

    Please help me!

    - - - Updated - - -

    MYSQL server version: 5.0.x
     
    #1 kemcoi, Apr 26, 2014
  2. samachosting

    samachosting Member

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    #2 samachosting, Apr 26, 2014
  3. thinkbot

    thinkbot Well-Known Member

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    run mysqltuner.pl and post the result
     
    #3 thinkbot, Apr 26, 2014
  4. cPanelMichael

    cPanelMichael Forums Analyst
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    Yes, assuming you believe MySQL is the culprit, please let it run for 24 hours and then post the results of the MySQL tuner script.

    Thank you.
     
    #4 cPanelMichael, Apr 28, 2014
  5. kemcoi

    kemcoi Registered

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    I have been add innodb_buffer_pool_size = 378M and innodb_file_per_table=1 to my.cnf file.and here are result of the MySQLTuner

    Code:
     >>  MySQLTuner 1.2.0 - Major Hayden <major@mhtx.net>
 >>  Bug reports, feature requests, and downloads at http://mysqltuner.com/
 >>  Run with '--help' for additional options and output filtering

-------- General Statistics --------------------------------------------------
[--] Skipped version check for MySQLTuner script
[OK] Currently running supported MySQL version 5.0.96
[!!] Switch to 64-bit OS - MySQL cannot currently use all of your RAM

-------- Storage Engine Statistics -------------------------------------------
[--] Status: -Archive +BDB -Federated +InnoDB -ISAM -NDBCluster
[--] Data in MyISAM tables: 31M (Tables: 4)
[--] Data in InnoDB tables: 6G (Tables: 565)
[!!] BDB is enabled but isn't being used
[OK] Total fragmented tables: 0

-------- Security Recommendations  -------------------------------------------
[!!] User '@localhost' has no password set.

-------- Performance Metrics -------------------------------------------------
[--] Up for: 4d 2h 33m 1s (7M q [20.765 qps], 300K conn, TX: 4B, RX: 877M)
[--] Reads / Writes: 31% / 69%
[--] Total buffers: 636.0M global + 6.2M per thread (300 max threads)
[!!] Allocating > 2GB RAM on 32-bit systems can cause system instability
[!!] Maximum possible memory usage: 2.4G (61% of installed RAM)
[OK] Slow queries: 0% (44K/7M)
[OK] Highest usage of available connections: 85% (255/300)
[OK] Key buffer size / total MyISAM indexes: 128.0M/134.0K
[OK] Key buffer hit rate: 99.9% (46K cached / 37 reads)
[OK] Query cache efficiency: 23.7% (509K cached / 2M selects)
[!!] Query cache prunes per day: 42150
[!!] Sorts requiring temporary tables: 60% (206K temp sorts / 341K sorts)
[OK] Temporary tables created on disk: 22% (4K on disk / 19K total)
[OK] Thread cache hit rate: 99% (431 created / 300K connections)
[OK] Table cache hit rate: 27% (1K open / 3K opened)
[OK] Open file limit used: 1% (30/2K)
[OK] Table locks acquired immediately: 99% (6M immediate / 6M locks)
[!!] InnoDB data size / buffer pool: 6.1G/378.0M

-------- Recommendations -----------------------------------------------------
General recommendations:
    Add skip-bdb to MySQL configuration to disable BDB
    Enable the slow query log to troubleshoot bad queries
Variables to adjust:
    query_cache_size (> 64M)
    sort_buffer_size (> 2M)
    read_rnd_buffer_size (> 2M)
    innodb_buffer_pool_size (>= 6G)
     
    #5 kemcoi, May 1, 2014
  6. thinkbot

    thinkbot Well-Known Member

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    adjust

    max_connections=100
    key_buffer = 30M
    join_buffer_size = 512K
    read_buffer_size = 128K
    sort_buffer_size = 256K
    read_rnd_buffer_size = 128K
    record_buffer = 1M - remove that

    add
    innodb_buffer_pool_size = 3G


    you got too less RAM, you should compress your tables or add more RAM to make innodb buffer fit all data in RAM
     
    #6 thinkbot, May 3, 2014
  7. kemcoi

    kemcoi Registered

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    I have been changed such as your suggest and now. CPU load: 13%.
    result of the mysqltuner. My server Centos 5 - 32Bit

    Code:
    [root@Dedi94144 home]# ./mysqltuner.pl

 >>  MySQLTuner 1.2.0 - Major Hayden <major@mhtx.net>
 >>  Bug reports, feature requests, and downloads at http://mysqltuner.com/
 >>  Run with '--help' for additional options and output filtering

-------- General Statistics --------------------------------------------------
[--] Skipped version check for MySQLTuner script
[OK] Currently running supported MySQL version 5.0.96
[!!] Switch to 64-bit OS - MySQL cannot currently use all of your RAM

-------- Storage Engine Statistics -------------------------------------------
[--] Status: -Archive +BDB -Federated +InnoDB -ISAM -NDBCluster
[--] Data in MyISAM tables: 38M (Tables: 5)
[--] Data in InnoDB tables: 6G (Tables: 565)
[!!] BDB is enabled but isn't being used
[OK] Total fragmented tables: 0


-------- Performance Metrics -------------------------------------------------
[--] Up for: 6m 17s (11K q [29.355 qps], 388 conn, TX: 7M, RX: 1M)
[--] Reads / Writes: 23% / 77%
[--] Total buffers: 2.2G global + 1.2M per thread (100 max threads)
[!!] Allocating > 2GB RAM on 32-bit systems can cause system instability
[!!] Maximum possible memory usage: 2.3G (57% of installed RAM)
[OK] Slow queries: 1% (132/11K)
[OK] Highest usage of available connections: 46% (46/100)
[OK] Key buffer size / total MyISAM indexes: 30.0M/147.0K
[!!] Key buffer hit rate: 84.9% (86 cached / 13 reads)
[OK] Query cache efficiency: 20.9% (537 cached / 2K selects)
[OK] Query cache prunes per day: 0
[!!] Sorts requiring temporary tables: 69% (270 temp sorts / 388 sorts)
[OK] Temporary tables created on disk: 14% (3 on disk / 21 total)
[OK] Thread cache hit rate: 88% (46 created / 388 connections)
[OK] Table cache hit rate: 98% (537 open / 543 opened)
[OK] Open file limit used: 1% (28/2K)
[OK] Table locks acquired immediately: 100% (9K immediate / 9K locks)
[!!] InnoDB data size / buffer pool: 6.1G/2.0G

-------- Recommendations -----------------------------------------------------
General recommendations:
    Add skip-bdb to MySQL configuration to disable BDB
    MySQL started within last 24 hours - recommendations may be inaccurate
    Enable the slow query log to troubleshoot bad queries
Variables to adjust:
    sort_buffer_size (> 256K)
    read_rnd_buffer_size (> 128K)
    innodb_buffer_pool_size (>= 6G)
    My my.cnf file:
    Code:
    [mysqld]
default-storage-engine=innodb
local-infile=0
skip-locking
max_connections=100
key_buffer = 30M
myisam_sort_buffer_size = 64M
join_buffer_size = 512K
read_buffer_size = 128K
sort_buffer_size = 256K
read_rnd_buffer_size = 128K
table_cache = 1024
#record_buffer = 1M
thread_cache_size = 128
wait_timeout = 30
connect_timeout = 10
interactive_timeout = 10
tmp_table_size = 64M
max_heap_table_size = 64M
max_allowed_packet = 16M
max_connect_errors = 10
query_cache_limit = 1M
query_cache_size = 64M
query_cache_type = 1
innodb_buffer_pool_size = 2G
innodb_file_per_table=1
#long_query_time=1
#log-slow-queries=/var/log/mysql/log-slow-queries.log
[isamchk]
key_buffer=64M
sort_buffer=64M
read_buffer=16M
write_buffer=16M
[myisamchk]
key_buffer=64M
sort_buffer=64M
read_buffer=16M
write_buffer=16M
[mysqlhotcopy]
interactive-timeout
     
    #7 kemcoi, May 4, 2014
  8. thinkbot

    thinkbot Well-Known Member

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    you set innodb_buffer_pool_size to 2G
    you can set it higher to 3G - this one variable in your case makes huge difference

    unfortunately it would be better if you went with 64-bit system,
    but you can set 3G on this one, it should work good


    and reduce query_cache_size to something like 30M, keep it smaller to have more RAM for innodb
    I would also reduce max_connections to 75
     
    #8 thinkbot, May 8, 2014
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