Looks like Apache 2.4.49 modules are still being listed in the repository. Although Apache 2.4.49 itself is not listed. I'm not sure if that would be problematic or not.
Also of note - updating cPanel also runs a yum update. There was a new cPanel update a few days ago (at least for the 94 branch). So even if you have automatic yum updates disabled, if you update cPanel, yum update is going to run. This has been problematic for me in the past when a cPanel update and an EasyApache update is released on the same day (EA updates are usually done on Thursdays it would seem). Although this may be mitigated since Apache 2.4.49 itself has been removed from the repository for right now. I mention this because someone may have been aware of the Apache 2.4.49 issues and wanted to avoid it, but if they run upcp, then they will inadvertently get updated to Apache 2.4.49 (at least prior to cPanel removing Apache 2.4.49 from the repository).