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Zombie fcgid processes don' t die

Discussion in 'General Discussion' started by Sannin, Mar 2, 2012.

  1. Sannin

    Sannin Active Member

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    Hello

    After some changes i did to my server, there are some php processes that don 't get killed automatically.

    First change i did is that i compiled apache with easyapache. I added xcache module and i updated php version to 5.3.10, although i believe i have xcache disabled. I read some similar threads, but the zombie processes are not created by graceful httpd restarted and i can't kill them with a full httpd restart. Some examples:

    ps auxf:

    Code:
    user3 25371  0.0  1.8  28080 14428 ?        S    17:21   0:00 /usr/bin/php    <-------   Zombie???
    root     25513  0.0  7.7  66580 59656 ?        Ss   17:27   0:00 /usr/local/apache/bin/httpd -k start -DSSL
    nobody   25515  0.0  7.4  65192 56824 ?        S    17:27   0:00  \_ /usr/local/apache/bin/httpd -k start -DSSL
    root     25516  0.0  0.7   8932  5512 ?        S    17:27   0:00  \_ /usr/bin/perl /usr/local/cpanel/bin/leechprotect
    nobody   25517  0.0  7.4  66336 56752 ?        S    17:27   0:00  \_ /usr/local/apache/bin/httpd -k start -DSSL
    user1 25550  0.2  2.1  33028 16564 ?        S    17:27   0:02  |   \_ /usr/bin/php
    user2 25848  0.1  3.4  40308 26532 ?        S    17:39   0:00  |   \_ /usr/bin/php
    nobody   25519  0.1  7.8 291120 59736 ?        Sl   17:27   0:01  \_ /usr/local/apache/bin/httpd -k start -DSSL
    nobody   25551  0.1  7.8 291484 60140 ?        Sl   17:27   0:02  \_ /usr/local/apache/bin/httpd -k start -DSSL

    post_virtualhost_global.conf:

    Code:
    <IfModule mod_fcgid.c> 
    FcgidMaxProcesses 15 
    FcgidMaxProcessesPerClass 10 
    FcgidIOTimeout 180 
    FcgidMinProcessesPerClass 1 
    FcgidIdleTimeout 180 
    FcgidIdleScanInterval 90 
    FcgidBusyTimeout 180 
    FcgidBusyScanInterval 90 
    FcgidErrorScanInterval 10 
    FcgidZombieScanInterval 3 
    FcgidProcessLifeTime 3600
    FcgidMaxRequestLen 1073741824
    FcgidMaxRequestsPerProcess 500
    </IfModule>  

    xcache config:

    Code:
    ; Directory in which the loadable extensions (modules) reside.
    extension_dir = "/usr/local/lib/php/extensions/no-debug-non-zts-20090626"
    extension = "xcache.so"
    extension = "suhosin.so"
    extension = "pdo.so"
    extension = "pdo_sqlite.so"
    extension = "sqlite.so"
    extension = "pdo_mysql.so"
    xcache.admin.enable_auth="off"
    xcache.admin.pass=""
    xcache.admin.user=""
    xcache.cacher="Off"
    xcache.coredump_directory=""
    xcache.count="1"
    xcache.coveragedump_directory=""
    xcache.coverager="Off"
    xcache.gc_interval="0"
    xcache.mmap_path="/tmp/xcache"
    xcache.optimizer="Off"
    xcache.readonly_protection="Off"
    xcache.size="0"
    xcache.slots="8K"
    xcache.test="Off"
    xcache.ttl="0"
    xcache.var_count="1"
    xcache.var_gc_interval="300"
    xcache.var_maxttl="0"
    xcache.var_size="0"
    xcache.var_slots="8K"
    xcache.var_ttl="0"
    xcache.shm_scheme="mmap"



    Second change i made was installing asl-lite script. That script installed the atomicorp repository and along with asl-lite it installed these packages too:

    Code:
    cat /var/log/yum.log
    Jan 06 18:38:07 Updated: glibc-common-2.5-65.el5_7.1.i386
    Jan 06 18:38:11 Updated: kernel-headers-2.6.18-274.12.1.el5.i386
    Jan 06 18:38:11 Updated: nash-5.1.19.6-71.el5_7.1.i386
    Jan 06 18:38:14 Updated: sos-1.7-9.54.el5_7.1.noarch
    Jan 06 18:38:24 Updated: glibc-2.5-65.el5_7.1.i686
    Jan 06 18:38:25 Updated: glibc-headers-2.5-65.el5_7.1.i386
    Jan 06 18:38:25 Updated: krb5-libs-1.6.1-63.el5_7.i386
    Jan 06 18:38:25 Updated: openldap-2.3.43-12.el5_7.10.i386
    Jan 06 18:38:25 Updated: kpartx-0.4.7-46.el5_7.2.i386
    Jan 06 18:38:26 Updated: glibc-devel-2.5-65.el5_7.1.i386
    Jan 06 18:38:26 Updated: krb5-devel-1.6.1-63.el5_7.i386
    Jan 06 18:38:27 Updated: ntp-4.2.2p1-15.el5.centos.1.i386
    Jan 06 18:38:29 Updated: device-mapper-multipath-0.4.7-46.el5_7.2.i386
    Jan 06 18:38:30 Updated: ntp-4.2.2p1-15.el5.centos.1.i386
    Jan 30 01:54:56 Updated: kernel-headers-2.6.18-274.17.1.el5.i386
    Jan 30 01:54:58 Updated: libxml2-2.6.26-2.1.12.el5_7.2.i386
    Jan 30 01:54:59 Updated: openssl-0.9.8e-20.el5_7.1.i686
    Jan 30 01:54:59 Updated: libxml2-python-2.6.26-2.1.12.el5_7.2.i386
    Jan 30 01:55:00 Updated: libxml2-devel-2.6.26-2.1.12.el5_7.2.i386
    Jan 30 01:55:02 Updated: openssl-devel-0.9.8e-20.el5_7.1.i386
    Feb 24 21:14:18 Updated: glibc-common-2.5-65.el5_7.3.i386
    Feb 24 21:14:19 Installed: pcre-devel-6.6-6.el5_6.1.i386
    Feb 24 21:14:28 Updated: glibc-2.5-65.el5_7.3.i686
    Feb 24 21:14:29 Updated: openssl-0.9.8e-20.el5_7.1.0.1.centos.i686
    Feb 24 21:14:29 Updated: 2:libpng-1.2.10-15.el5_7.i386
    Feb 24 21:14:30 Updated: glibc-headers-2.5-65.el5_7.3.i386
    Feb 24 21:14:32 Updated: openssl-devel-0.9.8e-20.el5_7.1.0.1.centos.i386
    Feb 24 21:14:32 Updated: 2:libpng-devel-1.2.10-15.el5_7.i386
    Feb 24 21:14:33 Updated: glibc-devel-2.5-65.el5_7.3.i386
    Feb 24 21:15:00 Updated: selinux-policy-2.4.6-316.el5_7.1.noarch
    Feb 24 21:15:00 Updated: kernel-headers-2.6.18-274.18.1.el5.i386
    Feb 24 21:15:13 Updated: selinux-policy-targeted-2.4.6-316.el5_7.1.noarch
    Mar 02 09:43:06 Installed: bigloo-libs-3.0c-1.el5.art.i386
    Mar 02 09:43:06 Installed: mysqlclient15-5.0.90-1.el5.art.i386
    Mar 02 09:43:07 Installed: unixODBC-2.2.11-7.1.i386
    Mar 02 09:43:08 Installed: roadsend-php-libs-2.9.8-9.el5.art.i386
    Mar 02 09:43:08 Installed: 1:asl-lite-2.2.7-1.el5.art.i386
    Mar 02 09:43:42 Installed: ORBit2-2.14.3-5.el5.i386
    Mar 02 09:43:43 Installed: libbonobo-2.16.0-1.1.el5_5.1.i386
    Mar 02 09:43:43 Installed: libart_lgpl-2.3.17-4.i386
    Mar 02 09:43:43 Installed: libXrender-0.9.1-3.1.i386
    Mar 02 09:43:43 Installed: cairo-1.2.4-5.el5.i386
    Mar 02 09:43:44 Installed: avahi-0.6.16-10.el5_6.i386
    Mar 02 09:43:44 Installed: libXmu-1.0.2-5.i386
    Mar 02 09:43:44 Installed: libXrandr-1.1.1-3.3.i386
    Mar 02 09:43:44 Installed: libXi-1.0.1-4.el5_4.i386
    Mar 02 09:43:44 Installed: apr-1.2.7-11.el5_6.5.i386
    Mar 02 09:43:44 Installed: 1:audiofile-0.2.6-5.i386
    Mar 02 09:43:44 Installed: libXfixes-4.0.1-2.1.i386
    Mar 02 09:43:44 Installed: libXcursor-1.1.7-1.1.i386
    Mar 02 09:43:45 Installed: libXaw-1.0.2-8.1.i386
    Mar 02 09:43:45 Installed: 1:xorg-x11-xauth-1.0.1-2.1.i386
    Mar 02 09:43:45 Installed: avahi-glib-0.6.16-10.el5_6.i386
    Mar 02 09:43:45 Installed: pycairo-1.2.0-1.1.i386
    Mar 02 09:43:45 Installed: libXft-2.1.10-1.1.i386
    Mar 02 09:43:45 Installed: pyorbit-2.14.1-3.el5.i386
    Mar 02 09:43:45 Installed: 1:dmidecode-2.11-1.el5.i386
    Mar 02 09:43:45 Installed: libxslt-1.1.17-2.el5_2.2.i386
    Mar 02 09:43:45 Installed: gmp-4.1.4-10.el5.i386
    Mar 02 09:43:46 Installed: cryptsetup-luks-1.0.3-8.el5.i386
    Mar 02 09:43:46 Installed: libXevie-1.0.1-3.1.i386
    Mar 02 09:43:46 Installed: libXTrap-1.0.0-3.1.i386
    Mar 02 09:43:46 Installed: 1:cups-libs-1.3.7-26.el5_6.1.i386
    Mar 02 09:43:46 Installed: sgpio-1.2.0_10-2.el5.i386
    Mar 02 09:43:47 Installed: gdb-7.0.1-37.el5_7.1.i386
    Mar 02 09:43:47 Installed: postgresql-libs-8.1.23-1.el5_7.3.i386
    Mar 02 09:43:47 Installed: apr-util-1.2.7-11.el5_5.2.i386
    Mar 02 09:43:47 Installed: libgfortran-4.1.2-51.el5.i386
    Mar 02 09:43:47 Installed: libXtst-1.0.1-3.1.i386
    Mar 02 09:43:47 Installed: libXxf86misc-1.0.1-3.1.i386
    Mar 02 09:43:48 Installed: libXinerama-1.0.1-2.1.i386
    Mar 02 09:43:48 Installed: alsa-lib-1.0.17-1.el5.i386
    Mar 02 09:43:48 Installed: 1:esound-0.2.36-3.i386
    Mar 02 09:43:48 Installed: libXfontcache-1.0.2-3.1.i386
    Mar 02 09:43:48 Installed: xorg-x11-server-utils-7.1-5.el5_6.2.i386
    Mar 02 09:43:48 Installed: xorg-x11-xinit-1.0.2-15.el5.i386
    Mar 02 09:43:49 Installed: python-numeric-23.7-2.2.2.el5_6.1.i386
    Mar 02 09:43:49 Installed: iscsi-initiator-utils-6.2.0.872-10.el5.i386
    Mar 02 09:43:49 Installed: startup-notification-0.8-4.1.i386
    Mar 02 09:43:50 Installed: lvm2-2.02.84-6.el5_7.2.i386
    Mar 02 09:43:50 Installed: shared-mime-info-0.19-5.el5.i386
    Mar 02 09:43:50 Installed: libXres-1.0.1-3.1.i386
    Mar 02 09:43:50 Installed: pciutils-3.1.7-3.el5.i386
    Mar 02 09:43:51 Installed: gcc-gfortran-4.1.2-51.el5.i386
    Mar 02 09:43:52 Installed: 1:doxygen-1.4.7-1.1.i386
    Mar 02 09:43:54 Installed: 1:valgrind-3.5.0-5.el5.i386
    Mar 02 09:43:55 Installed: texinfo-4.8-14.el5.i386
    Mar 02 09:43:55 Installed: ctags-5.6-1.1.i386
    Mar 02 09:43:55 Installed: swig-1.3.29-2.el5.i386
    Mar 02 09:43:56 Installed: patchutils-0.2.31-2.2.2.i386
    Mar 02 09:43:56 Installed: diffstat-1.41-1.2.3.el5.i386
    Mar 02 09:43:56 Installed: byacc-1.9-29.2.2.i386
    Mar 02 09:43:56 Installed: indent-2.2.9-14.fc6.i386
    Mar 02 09:43:56 Installed: splint-3.1.1-16.el5.i386
    Mar 02 09:43:57 Installed: oprofile-0.9.4-15.el5.centos.i386
    Mar 02 09:43:57 Installed: python-ldap-2.2.0-2.1.i386
    Mar 02 09:43:57 Installed: ltrace-0.5-13.45svn.el5_7.12.i386
    Mar 02 09:43:57 Installed: cscope-15.5-15.1.el5_3.1.i386
    Mar 02 09:43:59 Installed: bitstream-vera-fonts-1.10-7.noarch
    Mar 02 09:44:05 Installed: xorg-x11-fonts-base-7.1-2.1.el5.noarch
    Mar 02 09:44:05 Installed: gnome-mime-data-2.4.2-3.1.i386
    Mar 02 09:44:05 Installed: perl-URI-1.35-3.noarch
    Mar 02 09:44:06 Installed: hicolor-icon-theme-0.9-2.1.noarch
    Mar 02 09:44:16 Installed: kernel-devel-2.6.18-274.18.1.el5.i686
    Mar 02 09:44:16 Installed: pstack-1.2-7.2.2.i386
    Mar 02 09:44:16 Installed: automake15-1.5-16.el5.2.noarch
    Mar 02 09:44:16 Installed: redhat-rpm-config-8.0.45-32.el5.centos.noarch
    Mar 02 09:44:16 Installed: automake14-1.4p6-13.el5.1.noarch
    Mar 02 09:44:16 Installed: automake17-1.7.9-7.el5.2.noarch
    Mar 02 09:44:17 Installed: automake16-1.6.3-8.el5.1.noarch
    Mar 02 09:44:17 Installed: pango-1.14.9-8.el5.centos.3.i386
    Mar 02 09:44:20 Installed: gtk2-2.10.4-21.el5_7.7.i386
    Mar 02 09:44:20 Installed: GConf2-2.14.0-9.el5.i386
    Mar 02 09:44:21 Installed: libglade2-2.6.0-2.i386
    Mar 02 09:44:21 Installed: libgnomecanvas-2.14.0-4.1.i386
    Mar 02 09:44:21 Installed: gnome-keyring-0.6.0-1.fc6.i386
    Mar 02 09:44:21 Installed: pygtk2-2.10.1-12.el5.i386
    Mar 02 09:44:21 Installed: pygtk2-libglade-2.10.1-12.el5.i386
    Mar 02 09:44:22 Installed: gail-1.9.2-3.el5_4.i386
    Mar 02 09:44:22 Installed: at-spi-1.7.11-3.el5.i386
    Mar 02 09:44:22 Installed: pyspi-0.6.1-1.el5.i386
    Mar 02 09:44:22 Installed: libwnck-2.16.0-4.fc6.i386
    Mar 02 09:44:24 Installed: notification-daemon-0.3.5-9.el5.i386
    Mar 02 09:44:24 Installed: libnotify-0.4.2-6.el5.i386
    Mar 02 09:44:24 Installed: xorg-x11-server-Xvfb-1.1.1-48.76.el5_7.5.i386
    Mar 02 09:44:26 Installed: subversion-1.6.11-7.el5_6.4.i386
    Mar 02 09:44:27 Installed: libgnome-2.16.0-6.el5.i386
    Mar 02 09:44:27 Installed: hal-0.5.8.1-62.el5.i386
    Mar 02 09:44:28 Installed: gnome-vfs2-2.16.2-8.el5.i386
    Mar 02 09:44:29 Installed: libbonoboui-2.16.0-1.fc6.i386
    Mar 02 09:44:29 Installed: libgnomeui-2.16.0-5.el5.i386
    Mar 02 09:44:29 Installed: dmraid-1.0.0.rc13-65.el5.i386
    Mar 02 09:44:29 Installed: mkinitrd-5.1.19.6-71.el5_7.1.i386
    Mar 02 09:44:29 Installed: gnome-mount-0.5-3.el5.i386
    Mar 02 09:44:29 Installed: dmraid-events-1.0.0.rc13-65.el5.i386
    Mar 02 09:44:29 Installed: pm-utils-0.99.3-10.el5.centos.i386
    Mar 02 09:44:40 Installed: kernel-2.6.18-274.18.1.el5.i686
    Mar 02 09:44:40 Installed: systemtap-runtime-1.3-9.el5.i386
    Mar 02 09:44:44 Installed: systemtap-1.3-9.el5.i386
    Mar 02 09:44:45 Installed: gnome-python2-gnomevfs-2.16.0-1.fc6.i386
    Mar 02 09:44:45 Installed: gnome-python2-2.16.0-1.fc6.i386
    Mar 02 09:44:45 Installed: gnome-python2-gconf-2.16.0-1.fc6.i386
    Mar 02 09:44:45 Installed: dogtail-0.6.1-4.el5.noarch
    Mar 02 09:44:45 Installed: gnome-python2-bonobo-2.16.0-1.fc6.i386
    Mar 02 09:48:20 Erased: asl-lite

    I didn' t like those changes so i removed asl-lite and the repository but i can't remove the other packages. I don' t believe this is the problem though.

    I am forced to manually kill the zombie processes not to get my memory full, can you help me figure out the problem?
     
  2. Chris.Bshm

    Chris.Bshm Member

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    Hello,

    Can you provide the output of the file `/usr/local/apache/conf/php.conf`?
     
  3. Sannin

    Sannin Active Member

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    Of cource...

    Code:
    cat /usr/local/apache/conf/php.conf
    # This file was automatically generated by the Cpanel PHP Configuration system
    # If you wish to change the way PHP is being handled by Apache on your system,
    # use the /usr/local/cpanel/bin/rebuild_phpconf script or the WHM interface.
    #
    # Manual edits of this file will be lost when Apache is updated.
    
    
    # Fastcgi configuration for PHP5
    LoadModule fcgid_module modules/mod_fcgid.so
    MaxRequestsPerProcess 500
    AddHandler fcgid-script .php5 .php4 .php .php3 .php2 .phtml
    FCGIWrapper /usr/local/cpanel/cgi-sys/php5 .php5
    FCGIWrapper /usr/local/cpanel/cgi-sys/php5 .php4
    FCGIWrapper /usr/local/cpanel/cgi-sys/php5 .php
    FCGIWrapper /usr/local/cpanel/cgi-sys/php5 .php3
    FCGIWrapper /usr/local/cpanel/cgi-sys/php5 .php2
    FCGIWrapper /usr/local/cpanel/cgi-sys/php5 .phtml
    
    # End of autogenerated PHP configuration.


    Btw, i found out that more people have this problem recently. Maybe a bug in easyapache?

    http://forums.cpanel.net/f189/lost-abandoned-php-processes-apache-2-2-17-mod_fcgid-2-3-5-suexec-180571-p2.html
     
  4. Sannin

    Sannin Active Member

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    Some more info:

    According to directive FcgidProcessLifeTime 3600, the php process should have been killed at 3600 seconds, but it keeps going and going, either as a forked process under apache or as an abandoned one.
     
  5. Sannin

    Sannin Active Member

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    I made a ticket about this. It is a known issue and it is fixed in Easy Apache 3.10, so i guess i have to wait for the next update.
     
  6. plague

    plague Active Member

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    Twitter:
    Thank you for your feedback, Sannin. Had the same issue on two servers, one was running FCGI just fine and was rebuild with EA 2 weeks ago, when we face the problem the first time, and now on a new server.
    Machines where FCGI was installed long time ago doesn't show this problem.
     
    #6 plague, Mar 5, 2012
    Last edited: Mar 5, 2012
  7. funmaking

    funmaking Registered

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    Hi there,

    I have installed the Apache with the 3.10.2 version and the problem is the same. There are some processes with have not finished (imap, strange id with numbers, etc.

    Is it possible to fix this issue? Thanks!
     
  8. Quemeros

    Quemeros Member

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    One more confirmation, problem stille here with EA 3.10.2, i do upgrade RPM package's first to, and nothig, all the same.
     
  9. brainyron

    brainyron Member

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    I, too, must report that this issue is not fixed for me.
     
  10. Joriz

    Joriz Active Member

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    It seems to be back on some of our servers. Even with post_virtualhost_global.conf added.
    Now we restart Apache by a cron job every day to prevent all those zombie processes.

    Did anyone found a solution?
     
    #10 Joriz, Mar 11, 2012
    Last edited: Mar 12, 2012
  11. ikillbill

    ikillbill Well-Known Member

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    just re-compiled apache with easyapache 3.10.2 10 minutes ago

    issue is not fixed :(
     
  12. Sannin

    Sannin Active Member

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    I can confirm that issue is not fixed for me either. I have reopened my cpanel ticket when i have more news i will post them.

    I found a workaround from another thread (credits to the guy that wrote it there :P). I use this cronjob every 30 minutes, to get rid of the abandoned processes:

    Code:
    ps auxwwwf | grep '[0-9] /usr/bin/php' | awk '{ print $2 }' | xargs kill -9
    You may need to use it more often than 30 minutes, depending on your fcgid settings.
     
  13. cPanelMichael

    cPanelMichael Forums Analyst
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    Hello :)

    For anyone else experiencing this issue, please first check to ensure you have updated Apache/PHP using the latest version of EasyApache (version 3.10.2 at the time of writing this).

    If you continue to experience this issue, please submit a bug report using the following URL:

    Submit A Bug Report

    It's important that anyone experiencing the issue submits a bug report because the more reports we receive, the more we can tag any internal case that is opened for the issue.

    Thank you.
     
  14. ikillbill

    ikillbill Well-Known Member

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    bug issued~~~

    could everyone please issue your bug reports!
     
  15. ahhyes

    ahhyes Member

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    +1 to this issue.

    We're running php as fastcgi and php processes are just piling up, after a few hours, the server is tanking. We had not updated the machine in a while. As soon as we had updated, this problem appeared...

    I notice today that easyapache is at Easy::Apache v3.11.2, does this fix the issue?
     
  16. cPanelTristan

    cPanelTristan Quality Assurance Analyst
    Staff Member

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    Hello,

    As previously stated, please submit a ticket if you have not done so and the issue is still occurring. Please feel free to post the ticket number here.

    Thanks!
     
  17. Joriz

    Joriz Active Member

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    This is in the changelog:

    The two bold fixed cases might fix it. I will recompile Apache today on the server with the issue and test if the problem was fixed.
     
  18. Quemeros

    Quemeros Member

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    I recompile Apache today with EA 3.11... nothing change, this error isn't fixed.
     
  19. NixTree

    NixTree Well-Known Member

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  20. Quemeros

    Quemeros Member

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    Thanks Nibin, but this don't fix the problem, i try time ago, i re-try now, and again the zombies ( |-13*
    PHP:
     process create.
    When i create a ticket with cPanel supportthe answer was that the bug is in apache and fcgdid, and not to cPanel.
     
    #20 Quemeros, Mar 26, 2012
    Last edited: Mar 26, 2012
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